SPIREpy

Welcome

SPIREpy is a Python package and command-line tool that allows users to interact with the SPIRE database in a more convinient way.

Contents

• Quickstart
• API Reference

Installation

SPIREpy is available on PyPI and can be installed via

pip install spirepy

Credits

These tools have been developed by the Big Data Biology Lab at the Centre for Microbiome Research at the Queensland University of Technology (Brisbane, Australia). It is part of the SPIRE: a Searchable, Planetary-scale mIcrobiome REsource project.

SPIRE is published in

Thomas S B Schmidt, Anthony Fullam, Pamela Ferretti, Askarbek Orakov, Oleksandr
M Maistrenko, Hans-Joachim Ruscheweyh, Ivica Letunic, Yiqian Duan, Thea Van
Rossum, Shinichi Sunagawa, Daniel R Mende, Robert D Finn, Michael Kuhn, Luis
Pedro Coelho, Peer Bork, SPIRE: a Searchable, Planetary-scale mIcrobiome
REsource, Nucleic Acids Research, Volume 52, Issue D1, 5 January 2024, Pages
D777–D783
https://doi.org/10.1093/nar/gkad943

Please cite this publication when referencing SPIREpy.